Make an automatic ggplot2 plot for a pf object

Make an automatic ggplot2 plot for a pf object

Usage

# S3 method for class 'pf'
autoplot(
  object,
  columns = NULL,
  layout = "circular",
  suppress_tiplabels = FALSE,
  suppress_tippoints = FALSE,
  edge_traits = FALSE,
  continuous = "colour",
  size = 1.4,
  outline_size = 1.4 * size,
  ...
)

Arguments

object: A pf object to plot
columns: Columns to plot along with the phylogeny. Can use bare column names or any other tidyselect syntax
layout: ggtree::ggtree() layout to use.
suppress_tiplabels: If TRUE, don't draw tip labels.
edge_traits: A logical indicating whether the continuous avriable refers to edge traits, where the edge is determines by the terminal node. (default is FALSE, which means the variable refers to a node trait).
continuous: continuous transition for selected aesthethic ('size' or 'color'('colour')). It should be one of 'color' (or 'colour'), 'size', 'all' and 'none', default is 'colour'.
...: Other arguments passed to or from other methods.

Value

A ggplot object.

Examples

autoplot(pf(rpfc(100)) %>% dplyr::mutate(trait = rnorm(dplyr::n())), trait,
layout = "rectangular")