SLiM initialize() callback

This callback specifies the code should be called to set up the simulation. For details on what you can do in an initialize() callback code blocks see SLiM Manual: page 516

initialize()

Value

None

Copyright

This is documentation for a function in the SLiM software, and has been modified from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

See also

Other callbacks: early(), first(), fitnessEffect(), fitness(), interaction(), late(), mateChoice(), modifyChild(), mutationEffect(), mutation(), recombination(), reproduction(), slim_callbacks(), survival()

Author

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

Examples

slim_block(initialize(), {
  initializeMutationRate(1e-7)
  initializeMutationType("m1", 0.5, "f", 0.0)
  initializeGenomicElementType("g1", m1, 1.0)
  initializeGenomicElement(g1, 0, 99999)
  initializeRecombinationRate(1e-8)
})
#> A slimr_block:
#> <slimr_script[1]>
#> block_init:initialize() {
#>     initializeMutationRate(1e-07);
#>     initializeMutationType("m1", 0.5, "f", 0);
#>     initializeGenomicElementType("g1", m1, 1);
#>     initializeGenomicElement(g1, 0, 99999);
#>     initializeRecombinationRate(1e-08);
#> }