Documentation for SLiM function nucleotideFrequencies, which is a method
of the SLiM class SLiMBuiltin.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
nucleotideFrequencies(sequence)An object of type integer or string. See details for description.
An object of type float.
Documentation for this function can be found in the official SLiM manual: page 749.
A convenience function that returns a float vector of length four, providing the frequencies of occurrences of A / C / G / T nucleotides, respectively, in the supplied nucleotide sequence. The parameter sequence may be a singleton string (e.g., "TATA"), a string vector of single characters 0 α α α α 0 α α α α 0 α α α α 0 0 β α β β 0 β α α β 0 β β α β 0 (e.g., "T", "A", "T", "A"), or an integer vector (e.g., 3, 0, 3, 0), using SLiM's standard code of A=0, C=1, G=2, T=3.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other SLiMBuiltin:
SB,
calcFST(),
calcHeterozygosity(),
calcInbreedingLoad(),
calcPairHeterozygosity(),
calcVA(),
calcWattersonsTheta(),
codonsToAminoAcids(),
mm16To256(),
mmJukesCantor(),
mmKimura(),
nucleotideCounts(),
nucleotidesToCodons(),
summarizeIndividuals(),
treeSeqMetadata()
## This just brings up the documentation:
nucleotideFrequencies()