Documentation for SLiM function mutationCounts, which is a method of the
SLiM class Species.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
mutationCounts(subpops, mutations)An object of type null or integer or Subpopulation object. See details for description.
An object of type null or Mutation object. The default value is
NULL. See details for description.
An object of type integer.
Documentation for this function can be found in the official SLiM manual: page 721.
Return an integer vector with the frequency counts of all of the Mutation objects passed in mutations, within the Subpopulation objects in subpops. The subpops argument is required, but you may pass NULL to get population-wide frequency counts. Subpopulations may be supplied either as integer IDs, or as Subpopulation objects. If the optional mutations argument is NULL (the default), frequency counts will be returned for all of the active Mutation objects in the species - the same Mutation objects, and in the same order, as would be returned by the mutations property of sim, in other words. See the -mutationFrequencies() method to obtain float frequencies instead of integer counts. See also the Genome methods mutationCountsInGenomes() and mutationFrequenciesInGenomes().
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Species:
Sp,
addSubpopSplit(),
addSubpop(),
countOfMutationsOfType(),
individualsWithPedigreeIDs(),
killIndividuals(),
mutationFrequencies(),
mutationsOfType(),
outputFixedMutations(),
outputFull(),
outputMutations(),
readFromPopulationFile(),
recalculateFitness(),
registerFitnessEffectCallback(),
registerMateChoiceCallback(),
registerModifyChildCallback(),
registerMutationCallback(),
registerMutationEffectCallback(),
registerRecombinationCallback(),
registerReproductionCallback(),
registerSurvivalCallback(),
simulationFinished(),
skipTick(),
subsetMutations(),
treeSeqCoalesced(),
treeSeqOutput(),
treeSeqRememberIndividuals(),
treeSeqSimplify()