Documentation for SLiM function countOfMutationsOfType, which is a method
of the SLiM class Genome.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
Documentation for SLiM function countOfMutationsOfType, which is a method
of the SLiM class Individual.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
Documentation for SLiM function countOfMutationsOfType, which is a method
of the SLiM class Species.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
countOfMutationsOfType(mutType)
countOfMutationsOfType(mutType)
countOfMutationsOfType(mutType)An object of type integer or MutationType object. Must be of length 1 (a singleton). See details for description.
An object of type integer. Return will be of length 1 (a singleton)
An object of type integer. Return will be of length 1 (a singleton)
An object of type integer. Return will be of length 1 (a singleton)
Documentation for this function can be found in the official SLiM manual: page 672.
Returns the number of mutations that are of the type specified by mutType, out of all of the mutations in the genome. If you need a vector of the matching Mutation objects, rather than just a count, use -mutationsOfType(). This method is provided for speed; it is much faster than the corresponding Eidos code.
Documentation for this function can be found in the official SLiM manual: page 683.
Returns the number of mutations that are of the type specified by mutType, out of all of the mutations in the individual (in both of its genomes; a mutation that is present in both genomes counts twice). If you need a vector of the matching Mutation objects, rather than just a count, you should probably use uniqueMutationsOfType(). This method is provided for speed; it is much faster than the corresponding Eidos code.
Documentation for this function can be found in the official SLiM manual: page 720.
Returns the number of mutations that are of the type specified by mutType, out of all of the mutations that are currently active in the species. If you need a vector of the matching Mutation objects, rather than just a count, use -mutationsOfType(). This method is often used to determine whether an introduced mutation is still active (as opposed to being either lost or fixed). This method is provided for speed; it is much faster than the corresponding Eidos code.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Genome:
G,
addMutations(),
addNewDrawnMutation(),
addNewMutation(),
containsMarkerMutation(),
containsMutations(),
mutationCountsInGenomes(),
mutationFrequenciesInGenomes(),
mutationsOfType(),
nucleotides(),
outputMS(),
outputVCF(),
output(),
positionsOfMutationsOfType(),
readFromMS(),
readFromVCF(),
removeMutations(),
sumOfMutationsOfType()
Other Individual:
In,
containsMutations(),
relatedness(),
setSpatialPosition(),
sharedParentCount(),
sumOfMutationsOfType(),
uniqueMutationsOfType()
Other Species:
Sp,
addSubpopSplit(),
addSubpop(),
individualsWithPedigreeIDs(),
killIndividuals(),
mutationCounts(),
mutationFrequencies(),
mutationsOfType(),
outputFixedMutations(),
outputFull(),
outputMutations(),
readFromPopulationFile(),
recalculateFitness(),
registerFitnessEffectCallback(),
registerMateChoiceCallback(),
registerModifyChildCallback(),
registerMutationCallback(),
registerMutationEffectCallback(),
registerRecombinationCallback(),
registerReproductionCallback(),
registerSurvivalCallback(),
simulationFinished(),
skipTick(),
subsetMutations(),
treeSeqCoalesced(),
treeSeqOutput(),
treeSeqRememberIndividuals(),
treeSeqSimplify()