Documentation for SLiM function mutationsOfType, which is a method of the
SLiM class Genome.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
Documentation for SLiM function mutationsOfType, which is a method of the
SLiM class Species.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
mutationsOfType(mutType)
mutationsOfType(mutType)An object of type integer or MutationType object. Must be of length 1 (a singleton). See details for description.
An object of type Mutation object.
An object of type Mutation object.
Documentation for this function can be found in the official SLiM manual: page 673.
Returns an object vector of all the mutations that are of the type specified by mutType, out of all of the mutations in the genome. If you just need a count of the matching Mutation objects, rather than a vector of the matches, use -countOfMutationsOfType(); if you need just the positions of matching Mutation objects, use -positionsOfMutationsOfType(); and if you are aiming for a sum of the selection coefficients of matching Mutation objects, use -sumOfMutationsOfType(). This method is provided for speed; it is much faster than the corresponding Eidos code.
Documentation for this function can be found in the official SLiM manual: page 721.
Returns an object vector of all the mutations that are of the type specified by mutType, out of all of the mutations that are currently active in the species. If you just need a count of the matching Mutation objects, rather than a vector of the matches, use -countOfMutationsOfType(). This method is often used to look up an introduced mutation at a later point in the simulation, since there is no way to keep persistent references to objects in SLiM. This method is provided for speed; it is much faster than the corresponding Eidos code.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Genome:
G,
addMutations(),
addNewDrawnMutation(),
addNewMutation(),
containsMarkerMutation(),
containsMutations(),
countOfMutationsOfType(),
mutationCountsInGenomes(),
mutationFrequenciesInGenomes(),
nucleotides(),
outputMS(),
outputVCF(),
output(),
positionsOfMutationsOfType(),
readFromMS(),
readFromVCF(),
removeMutations(),
sumOfMutationsOfType()
Other Species:
Sp,
addSubpopSplit(),
addSubpop(),
countOfMutationsOfType(),
individualsWithPedigreeIDs(),
killIndividuals(),
mutationCounts(),
mutationFrequencies(),
outputFixedMutations(),
outputFull(),
outputMutations(),
readFromPopulationFile(),
recalculateFitness(),
registerFitnessEffectCallback(),
registerMateChoiceCallback(),
registerModifyChildCallback(),
registerMutationCallback(),
registerMutationEffectCallback(),
registerRecombinationCallback(),
registerReproductionCallback(),
registerSurvivalCallback(),
simulationFinished(),
skipTick(),
subsetMutations(),
treeSeqCoalesced(),
treeSeqOutput(),
treeSeqRememberIndividuals(),
treeSeqSimplify()