Documentation for SLiM function treeSeqSimplify, which is a method of the
SLiM class Species.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
treeSeqSimplify(void)An object of type . See details for description.
An object of type void.
Documentation for this function can be found in the official SLiM manual: page 730.
Triggers an immediate simplification of the tree sequence recording tables. This method may only be called if tree sequence recording has been turned on with initializeTreeSeq(). A call to this method will free up memory being used by entries that are no longer in the ancestral path of any individual within the current sample (currently living individuals, in other words, plus those explicitly added to the sample with treeSeqRememberIndividuals()), but it can also take a significant amount of time. Typically calling this method is not necessary; the automatic simplification performed occasionally by SLiM should be sufficient for most models.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Species:
Sp,
addSubpopSplit(),
addSubpop(),
countOfMutationsOfType(),
individualsWithPedigreeIDs(),
killIndividuals(),
mutationCounts(),
mutationFrequencies(),
mutationsOfType(),
outputFixedMutations(),
outputFull(),
outputMutations(),
readFromPopulationFile(),
recalculateFitness(),
registerFitnessEffectCallback(),
registerMateChoiceCallback(),
registerModifyChildCallback(),
registerMutationCallback(),
registerMutationEffectCallback(),
registerRecombinationCallback(),
registerReproductionCallback(),
registerSurvivalCallback(),
simulationFinished(),
skipTick(),
subsetMutations(),
treeSeqCoalesced(),
treeSeqOutput(),
treeSeqRememberIndividuals()