Documentation for SLiM function mutationCountsInGenomes, which is a
method of the SLiM class Genome.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
mutationCountsInGenomes(mutations)An object of type null or Mutation object. The default value is
NULL. See details for description.
An object of type integer.
Documentation for this function can be found in the official SLiM manual: page 672.
Return an integer vector with the frequency counts of all of the Mutation objects passed in mutations, within the target Genome vector. If the optional mutations argument is NULL (the default), frequency counts will be returned for all of the active Mutation objects in the simulation - the same Mutation objects, and in the same order, as would be returned by the mutations property of sim, in other words. See the +mutationFrequenciesInGenomes() method to obtain float frequencies instead of integer counts. See also the Species methods mutationCounts() and mutationFrequencies(), which may be more efficient for getting counts/frequencies for whole subpopulations or for the whole simulation.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Genome:
Genome,
addMutations(),
addNewDrawnMutation(),
addNewMutation(),
containsMarkerMutation(),
containsMutations(),
countOfMutationsOfType(),
mutationFrequenciesInGenomes(),
mutationsOfType(),
nucleotides(),
outputMS(),
outputVCF(),
output(),
positionsOfMutationsOfType(),
readFromMS(),
readFromVCF(),
removeMutations(),
sumOfMutationsOfType()