Documentation for SLiM function containsMutations, which is a method of
the SLiM class Genome.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
Documentation for SLiM function containsMutations, which is a method of
the SLiM class Individual.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
containsMutations(mutations)
containsMutations(mutations)An object of type Mutation object. See details for description.
An object of type logical.
An object of type logical.
Documentation for this function can be found in the official SLiM manual: page 672.
Returns a logical vector indicating whether each of the mutations in mutations is present in the genome; each element in the returned vector indicates whether the corresponding mutation is present (T) or absent (F). This method is provided for speed; it is much faster than the corresponding Eidos code.
Documentation for this function can be found in the official SLiM manual: page 682.
Returns a logical vector indicating whether each of the mutations in mutations is present in the individual (in either of its genomes); each element in the returned vector indicates whether the corresponding mutation is present (T) or absent (F). This method is provided for speed; it is much faster than the corresponding Eidos code.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Genome:
Genome,
addMutations(),
addNewDrawnMutation(),
addNewMutation(),
containsMarkerMutation(),
countOfMutationsOfType(),
mutationCountsInGenomes(),
mutationFrequenciesInGenomes(),
mutationsOfType(),
nucleotides(),
outputMS(),
outputVCF(),
output(),
positionsOfMutationsOfType(),
readFromMS(),
readFromVCF(),
removeMutations(),
sumOfMutationsOfType()
Other Individual:
Individual,
countOfMutationsOfType(),
relatedness(),
setSpatialPosition(),
sharedParentCount(),
sumOfMutationsOfType(),
uniqueMutationsOfType()