Documentation for SLiM function sumOfMutationsOfType, which is a method
of the SLiM class Genome.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
Documentation for SLiM function sumOfMutationsOfType, which is a method
of the SLiM class Individual.
Note that the R function is a stub, it does not do anything in R (except bring
up this documentation). It will only do
anything useful when used inside a slim_block function further
nested in a slim_script
function call, where it will be translated into valid SLiM code as part of a
full SLiM script.
sumOfMutationsOfType(mutType)
sumOfMutationsOfType(mutType)An object of type integer or MutationType object. Must be of length 1 (a singleton). See details for description.
An object of type float. Return will be of length 1 (a singleton)
An object of type float. Return will be of length 1 (a singleton)
Documentation for this function can be found in the official SLiM manual: page 676.
Returns the sum of the selection coefficients of all mutations that are of the type specified by mutType, out of all of the mutations in the genome. This is often useful in models that use a particular mutation type to represent QTLs with additive effects; in that context, sumOfMutationsOfType() will provide the sum of the additive effects of the QTLs for the given mutation type. This method is provided for speed; it is much faster than the corresponding Eidos code. Note that this method also exists on Individual, for cases in which the sum across both genomes of an individual is desired.
Documentation for this function can be found in the official SLiM manual: page 685.
Returns the sum of the selection coefficients of all mutations that are of the type specified by mutType, out of all of the mutations in the genomes of the individual. This is often useful in models that use a particular mutation type to represent QTLs with additive effects; in that context, sumOfMutationsOfType() will provide the sum of the additive effects of the QTLs for the given mutation type. This method is provided for speed; it is much faster than the corresponding Eidos code. Note that this method also exists on Genome, for cases in which the sum for just one genome is desired.
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016-2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/
Other Genome:
Genome,
addMutations(),
addNewDrawnMutation(),
addNewMutation(),
containsMarkerMutation(),
containsMutations(),
countOfMutationsOfType(),
mutationCountsInGenomes(),
mutationFrequenciesInGenomes(),
mutationsOfType(),
nucleotides(),
outputMS(),
outputVCF(),
output(),
positionsOfMutationsOfType(),
readFromMS(),
readFromVCF(),
removeMutations()
Other Individual:
Individual,
containsMutations(),
countOfMutationsOfType(),
relatedness(),
setSpatialPosition(),
sharedParentCount(),
uniqueMutationsOfType()